Plot ChIP annotation breakdowns

Source: R/ChIPseqViz.R

PlotChIPAnnos generates various plots for all annotated peaksets (as generated by annotatePeak) found in peak.anno.

PlotChIPAnnos(peak.anno, outpath, consensus = TRUE, comp = NULL,
  fc = NULL, fdr = NULL)

Arguments

peak.anno

A named list of csAnno objects with annotated peaks as returned by annotatePeak. If consensus = TRUE, only one is expected, otherwise there should be three (All DBRs, group1 up, group2 up).
outpath

Path to directory to be used for output.
consensus

Boolean indicating if consensus peaks are provided.
comp

Name of comparison, for file naming.
fc

Fold change threshold, for file naming.
fdr

FDR threshold, for file naming.