Plot gene counts as box plots

Plot gene counts as box plots

PlotRNABoxplots(res.list, dds, rld, outpath, padj.thresh, fc.thresh, top.n,
  level)

Arguments

res.list	Named List containing DESeqResults objects for all comparisons generated by ProcessDEGs.
dds	A DESeqDataSet object as returned by DESeq or RunDESeq2.
rld	A RangedSummarizedExperiment object of rlog transformed counts as returned by RunDESeq2.
outpath	Path to directory to be used for output.
padj.thresh	Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression.
fc.thresh	Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression.
top.n	Number of differentially expressed genes to create boxplots for, ranked by adj. p-value after applying padj.thresh and fc.thresh thresholds.
level	String defining variable of interest.