Plot gene counts as box plots
PlotRNABoxplots(res.list, dds, rld, outpath, padj.thresh, fc.thresh, top.n, level)
res.list | Named List containing DESeqResults objects for
all comparisons generated by |
---|---|
dds | |
rld | A RangedSummarizedExperiment object of
|
outpath | Path to directory to be used for output. |
padj.thresh | Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression. |
fc.thresh | Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression. |
top.n | Number of differentially expressed genes to create boxplots for,
ranked by adj. p-value after applying |
level | String defining variable of interest. |