Plot PCAs from variance stabilized counts for differentially expressed genes

Plot PCAs from variance stabilized counts for differentially expressed genes

PlotRNADEGPCAs(res.list, rld, vsd, outpath, level, plot.annos, padj.thresh,
  fc.thresh)

Arguments

res.list	Named List containing DESeqResults objects for all comparisons generated by ProcessDEGs.
rld	A RangedSummarizedExperiment object of rlog transformed counts as returned by RunDESeq2.
vsd	A RangedSummarizedExperiment object of vst transformed counts as returned by RunDESeq2.
outpath	Path to directory to be used for output.
level	String defining variable of interest.
plot.annos	String or character vector defining the column(s) in samplesheet to use to annotate figures.
padj.thresh	Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression.
fc.thresh	Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression.