R/RNAseqViz.R
PlotRNAHeatmaps.Rd
Generate per comparison DEG heatmaps for a list of DESeq2 results
PlotRNAHeatmaps(res.list, rld, vsd, level, outpath, padj.thresh, fc.thresh, plot.annos)
res.list | Named List containing DESeqResults objects for
all comparisons generated by |
---|---|
rld | A RangedSummarizedExperiment object of
|
vsd | A RangedSummarizedExperiment object of
|
level | String defining variable of interest. |
outpath | Path to directory to be used for output. |
padj.thresh | Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression. |
fc.thresh | Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression. |
plot.annos | String or character vector defining the column(s) to use to annotate figures. |