R/RNAseqViz.R
PlotRNAVolcanoes.Rd
Create volcano plots from a list of DESeq2 Results objects
PlotRNAVolcanoes(res.list, dds, outpath, padj.thresh, fc.thresh, n.labels = 10, use.labels = TRUE)
res.list | Named List containing DESeqResults objects for
all comparisons generated by |
---|---|
dds | A DESeqDataSet object as returned by
|
outpath | Path to directory to be used for output. |
padj.thresh | Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression. |
fc.thresh | Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression. |
n.labels | Number of genes to label on the volcano plot, ranked by adjusted p-value. |
use.labels | Boolean indicating whether labels should be added to plot. |