Create volcano plots from a list of DESeq2 Results objects

PlotRNAVolcanoes(res.list, dds, outpath, padj.thresh, fc.thresh,
  n.labels = 10, use.labels = TRUE)

Arguments

res.list

Named List containing DESeqResults objects for all comparisons generated by ProcessDEGs.

dds

A DESeqDataSet object as returned by DESeq, RunDESeq2, or ProcessDEGs.

outpath

Path to directory to be used for output.

padj.thresh

Number indicating the adjusted p-value cutoff to be used for determining "significant" differential expression.

fc.thresh

Number indicating the log2 fold-change cutoff to be used for determining "significant" differential expression.

n.labels

Number of genes to label on the volcano plot, ranked by adjusted p-value.

use.labels

Boolean indicating whether labels should be added to plot.