A dataset containing differential expression results from comparing treated vs untreated samples in the airway dataset using DESeq2.
Format
A data frame with 63677 rows and 7 columns:
- baseMean
Mean of normalized counts for all samples
- log2FoldChange
Log2 fold change between treated and untreated conditions
- lfcSE
Standard error of the log2 fold change estimate
- stat
Wald statistic
- pvalue
Wald test p-value
- padj
Benjamini-Hochberg adjusted p-value
- symbol
Gene symbol
- ensembl
Ensembl gene ID
Source
Generated from the airway Bioconductor package using DESeq2.
The contrast compares dexamethasone treatment ("trt") vs untreated ("untrt").
Examples
library(VizModules)
head(airway_deseq2)
#> baseMean log2FoldChange lfcSE stat pvalue
#> ENSG00000000003 708.6021697 -0.37884667 0.1731411 -2.1880804 0.02866375
#> ENSG00000000005 0.0000000 NA NA NA NA
#> ENSG00000000419 520.2979006 0.20376048 0.1005987 2.0254789 0.04281822
#> ENSG00000000457 237.1630368 0.03404294 0.1262790 0.2695852 0.78747941
#> ENSG00000000460 57.9326331 -0.11717811 0.3012365 -0.3889904 0.69728327
#> ENSG00000000938 0.3180984 -1.72456894 3.4936334 -0.4936319 0.62156615
#> padj ensembl symbol
#> ENSG00000000003 0.1393085 ENSG00000000003 TSPAN6
#> ENSG00000000005 NA ENSG00000000005 TNMD
#> ENSG00000000419 0.1833587 ENSG00000000419 DPM1
#> ENSG00000000457 0.9305689 ENSG00000000457 SCYL3
#> ENSG00000000460 0.8954426 ENSG00000000460 C1orf112
#> ENSG00000000938 NA ENSG00000000938 FGR