A dataset containing differential expression results from comparing treated vs untreated samples in the airway dataset using edgeR (quasi-likelihood).
Format
A data frame with columns:
- logFC
Log2 fold change between treated and untreated conditions
- logCPM
Log2 counts per million
- F
Quasi-likelihood F statistic
- PValue
Quasi-likelihood F-test p-value
- FDR
Benjamini-Hochberg adjusted p-value
- ensembl
Ensembl gene ID
- symbol
Gene symbol
Source
Generated from the airway Bioconductor package using edgeR.
The contrast compares dexamethasone treatment ("trt") vs untreated ("untrt").
Examples
library(VizModules)
head(airway_edger)
#> logFC logCPM F PValue FDR
#> ENSG00000152583 4.592225 5.542697 485.5167 4.650242e-09 7.405976e-05
#> ENSG00000250978 6.170713 1.408178 167.1807 5.173554e-08 2.045145e-04
#> ENSG00000134686 1.378839 7.000894 278.3245 5.209517e-08 2.045145e-04
#> ENSG00000179094 3.174553 5.182775 269.1113 6.025823e-08 2.045145e-04
#> ENSG00000125148 2.193761 7.416911 258.5757 7.154966e-08 2.045145e-04
#> ENSG00000148175 1.442768 9.031950 254.1664 7.704930e-08 2.045145e-04
#> ensembl symbol
#> ENSG00000152583 ENSG00000152583 SPARCL1
#> ENSG00000250978 ENSG00000250978 RP11-357D18.1
#> ENSG00000134686 ENSG00000134686 PHC2
#> ENSG00000179094 ENSG00000179094 PER1
#> ENSG00000125148 ENSG00000125148 MT2A
#> ENSG00000148175 ENSG00000148175 STOM