Publications

Papers

Andrews, J.M., Schmidt, J.A., Carson, K.R., Musiek, A.C., Mehta-Shah, N., and Payton, J.E. (2019). Novel cell adhesion/migration pathways are predictive markers of HDAC inhibitor resistance in cutaneous T cell lymphoma. EBioMedicine 46, 170–183. 10.1016/j.ebiom.2019.07.053.

Andrews, J.M., and Payton, J.E. (2019). Epigenetic dynamics in normal and malignant B cells: die a hero or live to become a villain. Current Opinion in Immunology 57, 15–22. 10.1016/j.coi.2018.09.020.

Soodgupta, D., White, L.S., Yang, W., Johnston, R., Andrews, J.M., Kohyama, M., Murphy, K.M., Mosammaparast, N., Payton, J.E., Bednarski, J.J. (2019). RAG-mediated DNA breaks attenuate PU.1 activity in early B cells through activation of a SPIC-BCLAF1 complex. Cell Reports. In press.

Andrews, J.M., El-Alawi, M., and Payton, J.E. (2018). Genotify: Fast, lightweight gene lookup and summarization. J Open Source Softw 3. 10.21105/joss.00885.

Morales, A.J., Carrero, J.A., Hung, P.J., Tubbs, A.T., Andrews, J.M., Edelson, B.T., Calderon, B., Innes, C.L., Paules, R.S., Payton, J.E., et al. (2017). A type I IFN-dependent DNA damage response regulates the genetic program and inflammasome activation in macrophages. ELife 6, e24655. 10.7554/eLife.24655.

Perlin, M.H., Amselem, J., Fontanillas, E., Toh, S.S., Chen, Z., Goldberg, J., Duplessis, S., Henrissat, B., Young, S., Zeng, Q., Aguileta, G., Petit, E., Badouin, H., Andrews, J., et al. (2015). Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus. BMC Genomics 16, 1–24. 10.1186/s12864-015-1660-8.

Perlin, M.H., Andrews, J., and Toh, S.S. (2014). Essential letters in the fungal alphabet: ABC and MFS transporters and their roles in survival and pathogenicity. Adv. Genet. 85, 201–253. 10.1016/B978-0-12-800271-1.00004-4.

Conference Posters (presented by myself or others)

Andrews, J., Schmidt, J., and Payton, J. (2018). Mapping the transcriptome and epigenomic landscape of HDAC-inhibitor resistant CTCL. The Journal of Immunology 200, 123.5-123.5.

Andrews, J., Zaydman, M., Pyfrom, S., Schmidt, J., Luo, H., Koues, O., Oltz, E., and Payton, J. (2018). A Precision Medicine Approach Using Whole Transcriptome Profiling by RNA-seq for B Cell Cancers. Am J Clin Pathol 149, S167–S167.

Fennoy, A., Fong, J., Andrews, J., Gasparrini, A., and Edwards, J. (2015). Identifying Potential Drivers of Differential DNA Methylation Patterns in Breast Cancer Cells. The FASEB Journal 29, LB143.